Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs4583356 | chr18:5242237 | C/T | 1.08E-8 | 212 | 9.1 | 12.82 | 4.73 | KM Plot |
| BLCA | rs4621073 | chr18:5241755 | A/G | 1.31E-8 | 211 | 9.1 | 12.57 | 4.73 | KM Plot |
| BLCA | rs4682447 | chr3:112662937 | C/T | 1.62E-8 | 216 | 2.7 | 15.73 | 8.87 | KM Plot |
| BLCA | rs4707570 | chr6:90497814 | A/G | 7.39E-7 | 216 | 9.43 | 9.97 | 3.3 | KM Plot |
| BLCA | rs471986 | chr11:130098367 | A/G | 1.96E-5 | 216 | 4.73 | 6.88 | 9.8 | KM Plot |
| BLCA | rs4759022 | chr12:56451909 | A/T | 0.000142 | 215 | 5.98 | 8.13 | 10.1 | KM Plot |
| BLCA | rs4796052 | chr17:26103034 | C/T | 3.84E-7 | 216 | 9.1 | 10.67 | 6.08 | KM Plot |
| BLCA | rs482842 | chr11:65045278 | T/G | 0 | 215 | 8.87 | 12.4 | 2.73 | KM Plot |
| BLCA | rs486020 | chr11:116483126 | C/G | 0 | 216 | 10.53 | 6.97 | 2.07 | KM Plot |
| BLCA | rs487397 | chr11:65022077 | T/C | 3.87E-14 | 214 | 2.17 | 12.33 | 9.05 | KM Plot |
| BLCA | rs487989 | chr11:65064690 | G/A | 1.42E-13 | 210 | 9.25 | 13 | 2.17 | KM Plot |
| BLCA | rs4923871 | chr15:40783722 | G/T | 3.18E-5 | 215 | 5.43 | 6.8 | 10.9 | KM Plot |
| BLCA | rs4923873 | chr15:40784859 | A/G | 3.18E-5 | 215 | 5.43 | 6.8 | 10.9 | KM Plot |
| BLCA | rs499027 | chr11:65025878 | T/G | 0 | 215 | 2.73 | 12.4 | 8.87 | KM Plot |
| BLCA | rs5030786 | chr15:40985054 | G/T | 2.17E-6 | 215 | 10.68 | 6.97 | 6.13 | KM Plot |